Using Receive a customer payment option and then reconcile....

Hello. I am wondering if I use the Receive a Customer Payment option and put in the date that is on the check, will I need to fix anything when I reconcile since the bank usually has any deposits pending for a day or so, so that means the date will not match?? I am not good at reconciling so any help or info on that front would be appreciated too. Thank you. -Noahs Roofing