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Tracking Gross Salary and Transfers in from FSA accounts are not categorised correctly!

I am tracking my gross salary in quicken and track contributions to FSA accounts like the commute, parking, dependent care and HSA. However, after I submit receipts and get refunded back into my account, I do a transfer from the appropriate FSA account into my primary checking account.

On the spending tab, when I select Income, it shows my Salary correctly, but also adds the transfers from the FSA accounts as well. My total monthly income because of this is always wrong and I can't figure out how to fix this. Can anyone give me some suggestions on how to fix or categorize this properly?

Thanks in advance!

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