Thank you for reaching out on the community and telling us about your issue. I do apologize for the issue you're having. That is odd that you're still flags with no downloads. Are all of the accounts experiencing issues coming from one bank or multiple? This has been a thing since a couple weeks ago but have you been able to accept the transactions over those two weeks? Another thing may be we may need to try updating the program as well.
One thing to try to remove the red flags/push the transactions through is to edit the register preferences real quick to see if any are stuck that we're unable to see. To do this navigate across the top to edit > preferences > Downloaded Transactions > Select Automatically add to banking registers. Hit OK then see if we have any new transactions that show up in the register. Afterwards go ahead and navigate to the same area and turn off the automatic entry if you'd like
Once you have a chance let us know how it goes and any additional information that you've been able to find as well.
Thanks,
Quicken Francisco