I, too, notice that interest income transactions are not being recorded when I download from my financial institution. For each of five accounts, all of which have a 12/30/2016 interest payment (pennies) on the money market account for the respective account, I had to enter those transactions manually. The cash accounts then reconciled. Previously, these downloaded transaction would record. I use Q for Mac 4.4.2.
Guys, thanks for reporting this issue and tracking it down. This is definitely a bug. It was introduced when we started merging buys and dividends into reinvested dividends in 4.0. We have a fix. We started a slow rollout today and will update everyone most like early next week. Sorry, we missed this bug before we shipped and thanks for reporting it. To fix the problem in your account, you will have to manually add back the interest dividends but once you take the update these transactions will start appearing.