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Duplicate Transactions with no Manual Entries Made

I just installed Quicken for Windows--2020 subscription version. I have been using Quicken Bill Pay online for a long time, but I had quit using Quicken. I only used Bill Pay website. I decided to start using Quicken again, so I started with a fresh install.
I downloaded my checking account transactions, no problem. But when I activated Bill Pay, the transactions from there showed up in my checking register as duplicates. The bill pay transactions have the "lightning bolt" symbol on them; the ones downloaded from the bank don't. The Bill Pay transactions don't have a "downloaded ID" but the bank ones do.
How can I fix this? I've read the support documents regarding duplicates. It sounds like I need to delete transactions from the register, but which ones?
Thanks.

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