I budget my paycheck and its gross amount. Then I have a category for every deduction. I have an HSA account and in the paycheck my 25 dollars a paycheck (twice a month) is categorizes as a transfer to the HSA account. I budget the paycheck in the budgeting tool.
In November my gross pay was 4034. After I entered everything it budgeted as 4084, 50 over.
https://i.imgur.com/Qf5EkSC.png In December my normal gross pay is 3914. The light green shows 3914. Which is what it should show, but after I enter the paychecks it double counts the HSA contributions.
https://i.imgur.com/mpEN66j.png When I change the category for my hsa contribution from a transfer and into a normal category everything lines up.
Basically when something is a TRANSFER on a paycheck it seems to double count the income in the planning tab.