After being prompted by my bank to update download accounts I noticed a checking and a savings account were trans-linked - the downloaded transactions for checking were in savings and vice versa. I paused downloading and manually entered the unaccepted transactions in each account - marking them cleared. Meanwhile, there was another request to update accounts which I did.
Then I deleted the unaccepted transactions in the download dialog. I hoped things would be OK on the next download. The transactions downloaded to the proper accounts but now the balances are way off. Should I just adjust the balances manually? I need to do something before the end of the month.