The Net Pay amount refects the amount for the blank line. I noticed the savings account is also missing from my account list. I added the account back and can add it back to the paycheck using the Add Deposit Account, but then the Net Pay amount is off by the amount that is not visible on the blank line.
I tried validate and super validate neither fixed my problem. Entering the paycheck into the register and then using ctrl + shift + s to see the split gave me an opportunity to fix the problem for that entry. I was able to add the new deposit account and amount but then had to enter a positive value for the blank line to get the correct Net Pay amount.