I am also having the same problem with all of my accounts.
a. I auto-reconciled once I accepted all the transactions. That is not working.
b. Since they are not auto-reconciled after being accepted, I have gone under to accept the download manually, and it tells me, "No uncleared items to reconcile," even when they are accepted.
I don't mind doing some footwork to fix this, but obviously, this is becoming a more significant issue. My problem happens around the last update or so. I am asking Quicken Support to come up with a fix! It would be greatly appreciated.