You might not like the solution, but the best way to beat this is to NOT reconcile to the Online Balance, but reconcile to the "paper statement". You don't have to wait for the billing cycle, you can use the current balance from the financial institution's website, current date and use $0 for Charges and Payments.
I find reconciling to online balance not that much of a problem in that it is typically very easy to identify what is wrong, though clearly need to be fixed ASAP.
Edit Mabe I am seeing something different than the op or misrembering what my experience has been as it usually involved clearly or unclearing a transaction in the reconcile dialog?
stevesjh, I'm experiecncing the same issue since the same date, and I agree having to do manual reconicialtion isn't the solution as I've bene doing the online reconciliation for years and all of a sudden it's incorrect. I did log a support ticket on this as it needs to be fixed.
I too am a Citi Bank card holder…
same here, it's a pain.
I synced with Citibank today 4/16 and it seems the issue is corrected…
same here, we will see how it looks this week.