I'm having a number of different problems since the Morgan Stanley conversion… Most alarmingly, I've made a number of trades in my E*TRADE brokerage accounts in the last few days; but the transactions are not showing up in Quicken. I've spoken with both Quicken and E*TRADE technical support but so far they're just pointing fingers at each other. E*TRADE says they're sending the transactions but Quicken initially indicated they weren't receiving them. After I pulled up the Quicken log file on my computer, it's clear that Quicken is receiving them but apparently doesn't know what to do with them. Not sure whose problem it is; but the two are clearly not communicating correctly - messages are either encoded incorrectly by E*TRADE, or Quick is not correctly decoding them…
The Quicken support person pointed me to an alert that doesn't seem to apply to my situation.