I have a fairly complicated paycheck (taxes, 401k, etc) including an HSA cash account entry (about $200/paycheck) and a net deposit into my bank account (about $3600/paycheck). Here's my problem: whenever I reconcile the HSA cash account, it changes the amount of my paycheck deposited into my bank account to the amount of the HSA deposit (i.e. from $3600 to $200). If I go the the bank account entry, click on the check mark to bring up the split window, the close the split window, the amount in the bank account goes back to $3600. It's fairly annoying, because it messes with both my bank account total and my bank account reconciliation.
This started happening maybe 4 (?) months ago, but I only really figured out that the cause was reconciling the HSA cash account recently.
The bank account is with E*Trade (technically it's the cash half of an investment account); the HSA account is with HSA Bank.
I'm really hoping someone else has seen something like this, because it's such bizarre behavior and I'd like to know I'm not going crazy.
Thanks everyone.